[Building Sakai] sakai demo 2.9.2 suddenly doesn't start after being operational for a weeks

Eli Shalnev eshalnev at tegrity.com
Wed Apr 30 22:01:34 PDT 2014 

Hi All,

I have a demo sakai server (2.9.2) installed on Debian Squeeze (Turnkey LAMP appliance)

The demo was operational for a few weeks and today suddenly after restart it fails to start.
I made a reboots in the past and it was starting fine after that.

Here is the first error I get when I try to start demo (catalina.out):

2014-04-30 10:25:39,901  WARN localhost-startStop-1 org.springframework.jdbc.datasource.LazyConnectionDataSourceProxy - Could not retrieve default auto-commit and transaction isolation settings
org.apache.commons.dbcp.SQLNestedException: Error preloading the connection pool
        at org.apache.commons.dbcp.SakaiBasicDataSource.createDataSource(SakaiBasicDataSource.java:251)
        at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
        at org.springframework.jdbc.datasource.LazyConnectionDataSourceProxy.afterPropertiesSet(LazyConnectionDataSourceProxy.java:163)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1369)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1335)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:473)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
        at java.security.AccessController.doPrivileged(Native Method)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
        at org.sakaiproject.util.NoisierDefaultListableBeanFactory.getBean(NoisierDefaultListableBeanFactory.java:112)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
        at java.security.AccessController.doPrivileged(Native Method)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
        at org.sakaiproject.util.NoisierDefaultListableBeanFactory.getBean(NoisierDefaultListableBeanFactory.java:112)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
        at java.security.AccessController.doPrivileged(Native Method)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
        at org.sakaiproject.util.NoisierDefaultListableBeanFactory.getBean(NoisierDefaultListableBeanFactory.java:112)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
        at org.sakaiproject.util.NoisierDefaultListableBeanFactory.preInstantiateSingletons(NoisierDefaultListableBeanFactory.java:73)
        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:728)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:380)
        at org.sakaiproject.component.impl.SpringCompMgr.init(SpringCompMgr.java:160)
        at org.sakaiproject.component.cover.ComponentManager.getInstance(ComponentManager.java:98)
        at org.sakaiproject.component.cover.ComponentManager.get(ComponentManager.java:107)
        at org.sakaiproject.component.cover.ServerConfigurationService.getInstance(ServerConfigurationService.java:52)
        at org.sakaiproject.util.RequestFilter.init(RequestFilter.java:811)
        at org.apache.catalina.core.ApplicationFilterConfig.initFilter(ApplicationFilterConfig.java:281)
        at org.apache.catalina.core.ApplicationFilterConfig.getFilter(ApplicationFilterConfig.java:262)
        at org.apache.catalina.core.ApplicationFilterConfig.<init>(ApplicationFilterConfig.java:107)
        at org.apache.catalina.core.StandardContext.filterStart(StandardContext.java:4746)
        at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5399)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
        at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
        at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
        at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:633)
        at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:977)
        at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1655)
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
        at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
        at java.util.concurrent.FutureTask.run(FutureTask.java:138)
        at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
        at java.lang.Thread.run(Thread.java:662)
Caused by: java.sql.SQLException: error in script file line: 622 S1000 General error java.lang.IllegalArgumentException: nanos > 999999999 or < 0 in statement [SET TABLE SAKAI_CLUSTER INDEX'18700823 0']
        at org.hsqldb.jdbc.Util.sqlException(Unknown Source)
        at org.hsqldb.jdbc.jdbcConnection.<init>(Unknown Source)
        at org.hsqldb.jdbcDriver.getConnection(Unknown Source)
        at org.hsqldb.jdbcDriver.connect(Unknown Source)
        at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
        at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
        at org.apache.commons.pool.impl.GenericObjectPool.addObject(GenericObjectPool.java:1666)
        at org.apache.commons.dbcp.SakaiBasicDataSource.createDataSource(SakaiBasicDataSource.java:246)
        ... 67 more
2014-04-30 10:25:40,042  INFO localhost-startStop-1 org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl - Loading hbm: class path resource [org/theospi/portfolio/security/impl/simple/AuthorizationImpl.hbm.xml]

Please help me to bring it back !

Thank you in advance!

Kindest regards,
Eli Shalnev
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