[Building Sakai] Starting up Sakai 2.6 on mysql fails?
Nicola Monat-Jacobs
nicola at nyu.edu
Fri Aug 21 13:31:04 PDT 2009
Ah, this could be my problem:
./common/lib/sakai-kernel-common-1.0.11.jar
./common/lib/sakai-kernel-common-1.0.6-SNAPSHOT.jar
./components/sakai-kernel-component/WEB-INF/lib/sakai-kernel-
impl-1.0.6-SNAPSHOT.jar
./components/sakai-kernel-component/WEB-INF/lib/sakai-kernel-
util-1.0.6-SNAPSHOT.jar
./components/sakai-mailarchive-pack/WEB-INF/lib/sakai-kernel-
util-1.0.11.jar
./shared/lib/sakai-kernel-api-1.0.11.jar
./shared/lib/sakai-kernel-api-1.0.6-SNAPSHOT.jar
./shared/lib/sakai-kernel-private-1.0.11.jar
./shared/lib/sakai-kernel-private-1.0.6-SNAPSHOT.jar
I'll see if I can weed out whatever dependencies in my src are drawing
these in.
Thanks Stephen!
Nicola
On Aug 21, 2009, at 4:04 PM, Stephen Marquard wrote:
> I'm afraid I don't have a clueful ideal about what
> java.lang.AbstractMethodError actually means.
>
> What version of the kernel did you start with, and what 2.6 source
> are you building with? (e.g. 2.6.0 or 2-6-x branch)
>
> Try:
>
> find . -name 'sakai-kernel*'
>
> in your tomcat to check that you don't have more than one version of
> the kernel jars. You should have something like:
>
> ./common/lib/sakai-kernel-common-1.0.11.jar
> ./components/entitybroker-pack/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./components/sakai-announcement-pack/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./components/sakai-comp-help/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./components/sakai-courier-pack/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./components/sakai-import/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./components/sakai-kernel-component
> ./components/sakai-kernel-component/META-INF/maven/
> org.sakaiproject.kernel/sakai-kernel-component
> ./components/sakai-kernel-component/WEB-INF/lib/sakai-kernel-
> impl-1.0.11.jar
> ./components/sakai-kernel-component/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./components/sakai-portal-render-pack/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./components/sakai-portal-service-pack/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./components/sakai-site-manage-pack/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./components/sms-pack/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./shared/lib/sakai-kernel-api-1.0.11.jar
> ./shared/lib/sakai-kernel-private-1.0.11.jar
> ./webapps/access/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/authn/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/direct/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/library/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/mercury/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/portal/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/portal-render/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/providers/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-alias-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-archive-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-authz-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-content-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-help-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-login-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-memory-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-message-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-profile-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-scheduler-tool/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./webapps/sakai-site-manage-group-helper/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./webapps/sakai-site-manage-group-section-role-helper/WEB-INF/lib/
> sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-site-manage-participant-helper/WEB-INF/lib/sakai-
> kernel-util-1.0.11.jar
> ./webapps/sakai-site-manage-tool/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./webapps/sakai-site-pageorder-helper/WEB-INF/lib/sakai-kernel-
> util-1.0.11.jar
> ./webapps/sakai-site-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-tool-tool-su/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/sakai-user-tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/tool/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
> ./webapps/web/WEB-INF/lib/sakai-kernel-util-1.0.11.jar
>
>
> Regards
> Stephen
>
>>>> Nicola Monat-Jacobs <nicola at nyu.edu> 8/21/2009 9:56 PM >>>
> We're also adding a few things to kernel (to make sakai-xythos
> integration work), if that a consideration.
>
> I've got Java 1.5.0_19.
>
> Could still be conflicting jars - any good way to tell if that's the
> culprit?
>
> Nicola
>
> On Aug 21, 2009, at 1:36 AM, Stephen Marquard wrote:
>
>> My tomcat theory is based on this error:
>>
>> java.lang.AbstractMethodError:
>> org.sakaiproject.authz.impl.SakaiSecurity$$EnhancerByCGLIB$
>> $7cb29c7a.getUserEffectiveRole(Ljava/lang/String;)Ljava/lang/String;
>>
>> because getUserEffectiveRole was a method added to the
>> SecurityService API (in the kernel) during 2-6-x development but
>> before 2.6.0 release.
>>
>> If it's not a problem of conflicting jars of different versions,
>> then maybe some other classloader issue? Are you building & running
>> with jdk 1.5?
>>
>> Regards
>> Stephen
>>
>>>>> Nicola Monat-Jacobs <nicola at nyu.edu> 8/20/2009 11:07 PM >>>
>> Still can't get rid of this error (now after two fresh tomcat
>> rounds)...
>>
>> In the interest of full disclosure, I do have another tomcat running
>> on a different port - xythos is on 8080 and sakai on 8181 (separate
>> tomcats). Perhaps this might be causing the clash Stephen is alluding
>> to?
>>
>> Also, I'm now using
>> hibernate.dialect=org.hibernate.dialect.MySQLDialect
>>
>> Thanks,
>> Nicola
>>
>> On Aug 20, 2009, at 3:51 PM, Anthony Whyte wrote:
>>
>>> Indeed, an unwashed Tomcat is a foul thing.
>>>
>>> Anth
>>>
>>>
>>>
>>> On Aug 20, 2009, at 3:14 PM, Nicola Monat-Jacobs wrote:
>>>
>>>> Unfortunately, Anthony's suggestion didn't work, but Stephen
>>>> suggested (offline) the following. Wanted to post for posterity.
>>>>
>>>> On Aug 20, 2009, at 3:04 PM, Stephen Marquard wrote:
>>>>
>>>>> Hi Nicola,
>>>>>
>>>>> My UCT mail is down at the moment so I can't post to sakai-dev,
>>>>> but your 2-6-x failure is probably a result of having older
>>>>> (pre-2.6.0) build artefacts in your tomcat deployment or possibly
>>>>> maven repo.
>>>>>
>>>>> You should start with a clean tomcat every time.
>>>>>
>>>>> Here's a build / install script for building on a Linux box.
>>>>>
>>>>> http://source.cet.uct.ac.za/svn/sakai/build/branches/sakai-trunk/sakai-build.sh
>>>>> http://source.cet.uct.ac.za/svn/sakai/build/branches/sakai-trunk/sakai-install.sh
>>>>>
>>>>> (installs into /usr/local/sakai/). I use something very similar on
>>>>> my Mac.
>>>>>
>>>>> Cheers
>>>>> Stephen
>>>>>
>>>>
>>>> On Aug 20, 2009, at 2:23 PM, Anthony Whyte wrote:
>>>>
>>>>> Looking at the Hibernate docs there are a number of MySQL specific
>>>>> sub-classes that extend org.hibernate.dialect.Dialect. See
>>>>>
>>>>> https://www.hibernate.org/hib_docs/v3/api/org/hibernate/dialect/Dialect.html
>>>>>
>>>>> MySQLDialect
>>>>> MySQLInnoDBDialect
>>>>> MySQLMyISAMDialect
>>>>> MySQL5Dialect
>>>>> MySQL5InnoDBDialect
>>>>>
>>>>>
>>>>> On Aug 20, 2009, at 2:02 PM, Anthony Whyte wrote:
>>>>>
>>>>>> As an experiment change the hibernate.dialect from
>>>>>>
>>>>>> hibernate.dialect=org.hibernate.dialect.MySQLInnoDBDialect
>>>>>>
>>>>>> to
>>>>>>
>>>>>> hibernate.dialect=org.hibernate.dialect.MySQLDialect
>>>>>>
>>>>>> restart Tomcat and see if you can log in.
>>>>>>
>>>>>> cheers,
>>>>>>
>>>>>> Anth
>>>>>>
>>>>>>
>>>>>> Dialects
>>>>>>
>>>>>> MySQL org.hibernate.dialect.MySQLDialect
>>>>>> MySQL with InnoDB org.hibernate.dialect.MySQLInnoDBDialect
>>>>>> MySQL with MyISAM org.hibernate.dialect.MySQLMyISAMDialect
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Aug 20, 2009, at 1:23 PM, Nicola Monat-Jacobs wrote:
>>>>>>
>>>>>>> Hi -
>>>>>>>
>>>>>>> I've having the very frustrating problem where I can't get 2.6
>>>>>>> working locally on my mac. I have MySQL 5.0.84 installed with
>>>>>>> the following settings in sakai.properties:
>>>>>>>
>>>>>>> ## MySQL settings - make sure to alter as appropriate
>>>>>>> vendor at org.sakaiproject.db.api.SqlService=mysql
>>>>>>> driverClassName at javax.sql.BaseDataSource=com.mysql.jdbc.Driver
>>>>>>> hibernate.dialect=org.hibernate.dialect.MySQLInnoDBDialect
>>>>>>> url at javax.sql.BaseDataSource=jdbc:mysql://127.0.0.1:3306/sakai?
>>>>>>> useUnicode=true&characterEncoding=UTF-8
>>>>>>> validationQuery at javax.sql.BaseDataSource=select 1 from DUAL
>>>>>>> defaultTransactionIsolationString
>>>>>>> @javax.sql.BaseDataSource=TRANSACTION_READ_COMMITTED
>>>>>>>
>>>>>>> I can log in to MySQL just fine with the username and password
>>>>>>> that I have in sakai.properties. I have created the sakai
>>>>>>> database with
>>>>>>> create database sakai default character set utf8;
>>>>>>> Sakai starts up fine (so the subject of this email is a little
>>>>>>> misleading), but as soon as I try to login with admin/admin I
>>>>>>> get the following stack trace and can't proceed. I've dropped
>>>>>>> and recreated the database a couple times. Anyone have any
>>>>>>> ideas?
>>>>>>>
>>>>>>> Thanks!
>>>>>>> Nicola
>>>>>>>
>>>>>>> 2009-08-20 13:17:58,293 WARN http-8181-Processor25
>>>>>>> org.sakaiproject.portal.util.ErrorReporter - Bug Report bug-id:
>>>>>>> 720ace5e-4805-47d0-a9fb-8ad96d8c9b6c user: admin usage-session:
>>>>>>> 5baa8c1b-01eb-4c4e-a63f-f982c969d581 time: Aug 20, 2009 13:17:58
>>>>>>> user comment: null stack trace
>>>>>>> java.lang.AbstractMethodError:
>>>>>>> org.sakaiproject.authz.impl.SakaiSecurity$$EnhancerByCGLIB$
>>>>>>> $7cb29c7a.getUserEffectiveRole(Ljava/lang/String;)Ljava/lang/
>>>>>>> String;
>>>>>>> at
>>>>>>> org
>>>>>>> .sakaiproject
>>>>>>> .authz
>>>>>>> .cover
>>>>>>> .SecurityService.getUserEffectiveRole(SecurityService.java:
>>>>>>> 161)
>>>>>>> at
>>>>>>> org
>>>>>>> .sakaiproject
>>>>>>> .portal
>>>>>>> .charon.handlers.SiteHandler.includeTabs(SiteHandler.java:
>>>>>>> 453)
>>>>>>> at
>>>>>>> org
>>>>>>> .sakaiproject
>>>>>>> .portal
>>>>>>> .charon.handlers.SiteHandler.includeSiteNav(SiteHandler.java:
>>>>>>> 370)
>>>>>>> at
>>>>>>> org
>>>>>>> .sakaiproject
>>>>>>> .portal.charon.handlers.SiteHandler.doSite(SiteHandler.java:219)
>>>>>>> at
>>>>>>> org
>>>>>>> .sakaiproject
>>>>>>> .portal.charon.handlers.SiteHandler.doGet(SiteHandler.java:113)
>>>>>>> at
>>>>>>> org
>>>>>>> .sakaiproject
>>>>>>> .portal
>>>>>>> .charon.SkinnableCharonPortal.doGet(SkinnableCharonPortal.java:
>>>>>>> 768)
>>>>>>> at javax.servlet.http.HttpServlet.service(HttpServlet.java:
>>>>>>> 627)
>>>>>>> at javax.servlet.http.HttpServlet.service(HttpServlet.java:
>>>>>>> 729)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina
>>>>>>> .core
>>>>>>> .ApplicationFilterChain
>>>>>>> .internalDoFilter(ApplicationFilterChain.java:269)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina
>>>>>>> .core
>>>>>>> .ApplicationFilterChain.doFilter(ApplicationFilterChain.java:
>>>>>>> 188)
>>>>>>> at
>>>>>>> org.sakaiproject.util.RequestFilter.doFilter(RequestFilter.java:
>>>>>>> 616)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina
>>>>>>> .core
>>>>>>> .ApplicationFilterChain
>>>>>>> .internalDoFilter(ApplicationFilterChain.java:215)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina
>>>>>>> .core
>>>>>>> .ApplicationFilterChain.doFilter(ApplicationFilterChain.java:
>>>>>>> 188)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina
>>>>>>> .core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina
>>>>>>> .core.StandardContextValve.invoke(StandardContextValve.java:172)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina.core.StandardHostValve.invoke(StandardHostValve.java:
>>>>>>> 127)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:
>>>>>>> 117)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina
>>>>>>> .core.StandardEngineValve.invoke(StandardEngineValve.java:108)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:
>>>>>>> 174)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .coyote.http11.Http11Processor.process(Http11Processor.java:875)
>>>>>>> at org.apache.coyote.http11.Http11BaseProtocol
>>>>>>> $
>>>>>>> Http11ConnectionHandler
>>>>>>> .processConnection(Http11BaseProtocol.java:665)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .tomcat
>>>>>>> .util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:
>>>>>>> 528)
>>>>>>> at
>>>>>>> org
>>>>>>> .apache
>>>>>>> .tomcat
>>>>>>> .util
>>>>>>> .net
>>>>>>> .LeaderFollowerWorkerThread
>>>>>>> .runIt(LeaderFollowerWorkerThread.java:81)
>>>>>>> at org.apache.tomcat.util.threads.ThreadPool
>>>>>>> $ControlRunnable.run(ThreadPool.java:689)
>>>>>>> at java.lang.Thread.run(Thread.java:613)
>>>>>>>
>>>>>>> Tool Placement:
>>>>>>> No Placement
>>>>>>>
>>>>>>> Request:
>>>>>>> : AuthType:null
>>>>>>> : CharEncoding:UTF-8
>>>>>>> : ContentLength:-1
>>>>>>> : ContentType:null
>>>>>>> : ContextPath:/portal
>>>>>>> : LocalAddress:127.0.0.1
>>>>>>> : LocalName:localhost
>>>>>>> : LocalPort:8181
>>>>>>> : Method:GET
>>>>>>> : PathInfo:/
>>>>>>> : Protocol:HTTP/1.1
>>>>>>> : QueryString:null
>>>>>>> : RemoteAddress:127.0.0.1
>>>>>>> : RemoteHost:127.0.0.1
>>>>>>> : RemotePort:62136
>>>>>>> : Requested URL:http://localhost:8181/portal
>>>>>>> : Scheme:http
>>>>>>> : ServerName:localhost
>>>>>>> : Headers:
>>>>>>> : Header:host:localhost:8181
>>>>>>> : Header:user-agent:Mozilla/5.0 (Macintosh; U; Intel Mac
>>>>>>> OS X 10_5_7; en-us) AppleWebKit/530.18 (KHTML, like Gecko)
>>>>>>> Version/4.0.1 Safari/530.18
>>>>>>> : Header:accept-language:en-us
>>>>>>> : Header:accept-encoding:gzip, deflate
>>>>>>> : Header:referer:http://localhost:8181/portal
>>>>>>> : Header:accept:application/xml,application/xhtml
>>>>>>> +xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5
>>>>>>> : Header:origin:http://localhost:8181
>>>>>>> : Header:cookie:---censored---
>>>>>>> : Header:connection:keep-alive
>>>>>>> : Parameters:
>>>>>>> : Attributes:
>>>>>>> :
>>>>>>> Attribute:sakai
>>>>>>> .session:org.sakaiproject.tool.impl.SessionComponent
>>>>>>> $MySession at 457d181f
>>>>>>> :
>>>>>>> Attribute:sakai
>>>>>>> .character.encoding.done:sakai.character.encoding.done
>>>>>>> : Attribute:sakai.filtered:sakai.filtered
>>>>>>> Session:
>>>>>>> : Created:1250788674649
>>>>>>> : LastAccess:1250788678272
>>>>>>> : MaxInactive:3600
>>>>>>> : Attributes:
>>>>>>> : Attribute:portalskin:defaultskin
>>>>>>>
>>>>>>> 2009-08-20 13:17:58,299 WARN http-8181-Processor25
>>>>>>> org.sakaiproject.email.impl.BasicEmailService - send:
>>>>>>> javax.mail.internet.AddressException: Illegal address in string
>>>>>>> ``''
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> sakai-dev mailing list
>>>>>>> sakai-dev at collab.sakaiproject.org
>>>>>>> http://collab.sakaiproject.org/mailman/listinfo/sakai-dev
>>>>>>>
>>>>>>> TO UNSUBSCRIBE: send email to sakai-dev-unsubscribe at collab.sakaiproject.org
>>>>>>> with a subject of "unsubscribe"
>>>>>>
>>>>>> _______________________________________________
>>>>>> sakai-dev mailing list
>>>>>> sakai-dev at collab.sakaiproject.org
>>>>>> http://collab.sakaiproject.org/mailman/listinfo/sakai-dev
>>>>>>
>>>>>> TO UNSUBSCRIBE: send email to sakai-dev-unsubscribe at collab.sakaiproject.org
>>>>>> with a subject of "unsubscribe"
>>>>>
>>>>
>>>
>>
>>
>
>
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