[Building Sakai] AuthzPermissionException Thrown After Upgrading from 2.7.1 to 2.9.3

[BJ Peter DeLaCruz]

Hi,

I have a MySQL database dump (table structures) for Sakai 2.7.1, and I am
trying to upgrade the database to Sakai 2.9.3. The scripts upgraded the
database fine, but when I start up Tomcat, I see the following errors in
the log file. There is no data in the database.

Is the admin user automatically created by Sakai when it starts up for the
first time and the database is empty? How can I fix this error? I am
upgrading the database on Windows 7, and I am running MySQL 5.6.16.

Thanks,
BJ

org.springframework.beans.factory.BeanCreationException: Error creating
bean with name
'org.theospi.portfolio.security.DefaultRealmManager.portfolio' defined in
file
[C:\opt2\apache-tomcat-7.0.52\components\osp-common-component\WEB-INF\components.xml]:
Invocation of init method failed; nested exception is
java.lang.RuntimeException:
org.sakaiproject.authz.api.AuthzPermissionException user=admin
function=realm.add resource=/realm/!site.template.portfolio
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1338)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:473)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
at java.security.AccessController.doPrivileged(Native Method)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
at
org.sakaiproject.util.NoisierDefaultListableBeanFactory.getBean(NoisierDefaultListableBeanFactory.java:112)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
at
org.sakaiproject.util.NoisierDefaultListableBeanFactory.preInstantiateSingletons(NoisierDefaultListableBeanFactory.java:73)
at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:728)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:380)
at
org.sakaiproject.component.impl.SpringCompMgr.init(SpringCompMgr.java:160)
at
org.sakaiproject.component.cover.ComponentManager.getInstance(ComponentManager.java:98)
at
org.sakaiproject.component.cover.ComponentManager.get(ComponentManager.java:107)
at
org.sakaiproject.component.cover.ServerConfigurationService.getInstance(ServerConfigurationService.java:52)
at org.sakaiproject.util.RequestFilter.init(RequestFilter.java:811)
at
org.apache.catalina.core.ApplicationFilterConfig.initFilter(ApplicationFilterConfig.java:279)
at
org.apache.catalina.core.ApplicationFilterConfig.getFilter(ApplicationFilterConfig.java:260)
at
org.apache.catalina.core.ApplicationFilterConfig.<init>(ApplicationFilterConfig.java:105)
at
org.apache.catalina.core.StandardContext.filterStart(StandardContext.java:4809)
at
org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5485)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at
org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
at
org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:439)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.RuntimeException:
org.sakaiproject.authz.api.AuthzPermissionException user=admin
function=realm.add resource=/realm/!site.template.portfolio
at
org.theospi.portfolio.security.model.DefaultRealmManagerImpl.init(DefaultRealmManagerImpl.java:75)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1414)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1375)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1335)
... 35 more
Caused by: org.sakaiproject.authz.api.AuthzPermissionException user=admin
function=realm.add resource=/realm/!site.template.portfolio
at
org.sakaiproject.authz.impl.BaseAuthzGroupService.unlock(BaseAuthzGroupService.java:163)
at
org.sakaiproject.authz.impl.BaseAuthzGroupService.addAuthzGroup(BaseAuthzGroupService.java:712)
at
org.theospi.portfolio.security.model.DefaultRealmManagerImpl.init(DefaultRealmManagerImpl.java:69)
... 42 more
java.lang.Exception: traceback
at
org.sakaiproject.util.NoisierDefaultListableBeanFactory.destroySingletons(NoisierDefaultListableBeanFactory.java:94)
at
org.sakaiproject.util.NoisierDefaultListableBeanFactory.preInstantiateSingletons(NoisierDefaultListableBeanFactory.java:83)
at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:728)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:380)
at
org.sakaiproject.component.impl.SpringCompMgr.init(SpringCompMgr.java:160)
at
org.sakaiproject.component.cover.ComponentManager.getInstance(ComponentManager.java:98)
at
org.sakaiproject.component.cover.ComponentManager.get(ComponentManager.java:107)
at
org.sakaiproject.component.cover.ServerConfigurationService.getInstance(ServerConfigurationService.java:52)
at org.sakaiproject.util.RequestFilter.init(RequestFilter.java:811)
at
org.apache.catalina.core.ApplicationFilterConfig.initFilter(ApplicationFilterConfig.java:279)
at
org.apache.catalina.core.ApplicationFilterConfig.getFilter(ApplicationFilterConfig.java:260)
at
org.apache.catalina.core.ApplicationFilterConfig.<init>(ApplicationFilterConfig.java:105)
at
org.apache.catalina.core.StandardContext.filterStart(StandardContext.java:4809)
at
org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5485)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at
org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
at
org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:439)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
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