[Deploying Sakai] MySQL: MyISAM or InnoDB?
Sam Ottenhoff
ottenhoff at longsight.com
Tue May 7 06:17:50 PDT 2013
Right, MySQL doesn't like your binary logging strategy.
https://confluence.atlassian.com/display/JIRAKB/MySQL+Binary+Logging+Problem+with+InnoDB+When+Creating+a+Workflow
On Tue, May 7, 2013 at 9:15 AM, Warwick Chapman <warwickchapman at gmail.com>wrote:
> Steve
>
> It broke:
>
> 2013-05-07 14:55:43,389 WARN http-bio-8080-exec-18
> org.sakaiproject.portal.util.ErrorReporter - Bug Report bug-id:
> 92984805-e6c2-4f69-898e-0bc3c3e8b83f user: null usage-session: null time:
> 07-May-2013 14:55:43 user comment: null stack trace
> org.sakaiproject.portal.api.PortalHandlerException:
> java.lang.RuntimeException: SqlService.dbWrite failure
> at
> org.sakaiproject.portal.charon.handlers.ReLoginHandler.doPost(ReLoginHandler.java:50)
> caused by: java.lang.RuntimeException: SqlService.dbWrite failure
> at
> org.sakaiproject.db.impl.BasicSqlService.dbWrite(BasicSqlService.java:1143)
> caused by: java.sql.SQLException: Binary logging not possible. Message:
> Transaction level 'READ-COMMITTED' in InnoDB is not safe for binlog mode
> 'STATEMENT'
>
>
> I turned binary logging off (which I had enabled in preparation to setup
> replication) and it is no longer throwing the error.
>
> Any thoughts?
>
>
> -- Warwick Bruce Chapman | +27 83 7797 094 | http://warwickchapman.com
>
>
> On Tue, May 7, 2013 at 1:55 PM, Steve Swinsburg <steve.swinsburg at gmail.com
> > wrote:
>
>> Hi Warwick,
>>
>> You can indeed. Though backup, and arrange a downtime to be on the safe
>> side. Those particular tables shouldn't have too much content so probably
>> won't take long
>>
>> ALTER TABLE tablename ENGINE=INNODB;
>>
>> cheers,
>> Steve
>>
>> On 07/05/2013, at 7:22 PM, Warwick Chapman <warwickchapman at gmail.com>
>> wrote:
>>
>> Steve
>>
>> I have just done a check on the engine type for all the tables in our
>> Sakai DB and the result follows. Can I safely convert all the MyISAM's to
>> InnoDB without failure?:
>>
>> mysql> select table_name,engine from information_schema.tables where
>> table_schema="sakai";
>> +--------------------------------+--------+
>> | table_name | engine |
>> +--------------------------------+--------+
>> | ANNOUNCEMENT_CHANNEL | InnoDB |
>> | ANNOUNCEMENT_MESSAGE | InnoDB |
>> | ASN_AP_ITEM_ACCESS_T | InnoDB |
>> | ASN_AP_ITEM_T | InnoDB |
>> | ASN_MA_ITEM_T | InnoDB |
>> | ASN_NOTE_ITEM_T | InnoDB |
>> | ASN_SUP_ATTACH_T | InnoDB |
>> | ASN_SUP_ITEM_T | InnoDB |
>> | ASSIGNMENT_ASSIGNMENT | InnoDB |
>> | ASSIGNMENT_CONTENT | InnoDB |
>> | ASSIGNMENT_SUBMISSION | InnoDB |
>> | BBB_MEETING | InnoDB |
>> | BBB_MEETING_PARTICIPANT | InnoDB |
>> | CALENDAR_CALENDAR | InnoDB |
>> | CALENDAR_EVENT | InnoDB |
>> | CHAT2_CHANNEL | InnoDB |
>> | CHAT2_MESSAGE | InnoDB |
>> | CITATION_CITATION | InnoDB |
>> | CITATION_COLLECTION | InnoDB |
>> | CITATION_SCHEMA | InnoDB |
>> | CITATION_SCHEMA_FIELD | InnoDB |
>> | CMN_TYPE_T | InnoDB |
>> | CM_ACADEMIC_SESSION_T | InnoDB |
>> | CM_COURSE_SET_CANON_ASSOC_T | InnoDB |
>> | CM_COURSE_SET_OFFERING_ASSOC_T | InnoDB |
>> | CM_CROSS_LISTING_T | InnoDB |
>> | CM_ENROLLMENT_SET_T | InnoDB |
>> | CM_ENROLLMENT_T | InnoDB |
>> | CM_MEETING_T | InnoDB |
>> | CM_MEMBERSHIP_T | InnoDB |
>> | CM_MEMBER_CONTAINER_T | InnoDB |
>> | CM_OFFICIAL_INSTRUCTORS_T | InnoDB |
>> | CM_SEC_CATEGORY_T | InnoDB |
>> | CONTENT_COLLECTION | InnoDB |
>> | CONTENT_DROPBOX_CHANGES | InnoDB |
>> | CONTENT_RESOURCE | InnoDB |
>> | CONTENT_RESOURCE_BODY_BINARY | InnoDB |
>> | CONTENT_RESOURCE_DELETE | InnoDB |
>> | CONTENT_TYPE_REGISTRY | InnoDB |
>> | DIRECTORYEDITOR_FIELDS | MyISAM |
>> | EMAIL_TEMPLATE_ITEM | InnoDB |
>> | ENTITY_PROPERTIES | InnoDB |
>> | ENTITY_TAG_APPLICATIONS | InnoDB |
>> | GB_CATEGORY_T | InnoDB |
>> | GB_COMMENT_T | InnoDB |
>> | GB_GRADABLE_OBJECT_T | InnoDB |
>> | GB_GRADEBOOK_T | InnoDB |
>> | GB_GRADE_MAP_T | InnoDB |
>> | GB_GRADE_RECORD_T | InnoDB |
>> | GB_GRADE_TO_PERCENT_MAPPING_T | InnoDB |
>> | GB_GRADING_EVENT_T | InnoDB |
>> | GB_GRADING_SCALE_GRADES_T | InnoDB |
>> | GB_GRADING_SCALE_PERCENTS_T | InnoDB |
>> | GB_GRADING_SCALE_T | InnoDB |
>> | GB_LETTERGRADE_MAPPING | InnoDB |
>> | GB_LETTERGRADE_PERCENT_MAPPING | InnoDB |
>> | GB_PERMISSION_T | InnoDB |
>> | GB_PROPERTY_T | InnoDB |
>> | GB_SPREADSHEET_T | InnoDB |
>> | MAILARCHIVE_CHANNEL | InnoDB |
>> | MAILARCHIVE_MESSAGE | InnoDB |
>> | MFR_AREA_T | InnoDB |
>> | MFR_ATTACHMENT_T | InnoDB |
>> | MFR_DATE_RESTRICTIONS_T | InnoDB |
>> | MFR_EMAIL_NOTIFICATION_T | InnoDB |
>> | MFR_HIDDEN_GROUPS_T | MyISAM |
>> | MFR_LABEL_T | InnoDB |
>> | MFR_MEMBERSHIP_ITEM_T | InnoDB |
>> | MFR_MESSAGE_T | InnoDB |
>> | MFR_OPEN_FORUM_T | InnoDB |
>> | MFR_PERMISSION_LEVEL_T | InnoDB |
>> | MFR_PRIVATE_FORUM_T | InnoDB |
>> | MFR_PVT_MSG_USR_T | InnoDB |
>> | MFR_SYNOPTIC_ITEM | InnoDB |
>> | MFR_TOPIC_T | InnoDB |
>> | MFR_UNREAD_STATUS_T | InnoDB |
>> | POLL_OPTION | InnoDB |
>> | POLL_POLL | InnoDB |
>> | POLL_VOTE | InnoDB |
>> | PROFILE_COMPANY_PROFILES_T | InnoDB |
>> | PROFILE_EXTERNAL_INTEGRATION_T | InnoDB |
>> | PROFILE_FRIENDS_T | InnoDB |
>> | PROFILE_GALLERY_IMAGES_T | InnoDB |
>> | PROFILE_IMAGES_EXTERNAL_T | InnoDB |
>> | PROFILE_IMAGES_OFFICIAL_T | InnoDB |
>> | PROFILE_IMAGES_T | InnoDB |
>> | PROFILE_KUDOS_T | InnoDB |
>> | PROFILE_MESSAGES_T | InnoDB |
>> | PROFILE_MESSAGE_PARTICIPANTS_T | InnoDB |
>> | PROFILE_MESSAGE_THREADS_T | InnoDB |
>> | PROFILE_PREFERENCES_T | InnoDB |
>> | PROFILE_PRIVACY_T | InnoDB |
>> | PROFILE_SOCIAL_INFO_T | InnoDB |
>> | PROFILE_STATUS_T | InnoDB |
>> | PROFILE_WALL_ITEMS_T | MyISAM |
>> | PROFILE_WALL_ITEM_COMMENTS_T | MyISAM |
>> | QRTZ_BLOB_TRIGGERS | InnoDB |
>> | QRTZ_CALENDARS | InnoDB |
>> | QRTZ_CRON_TRIGGERS | InnoDB |
>> | QRTZ_FIRED_TRIGGERS | InnoDB |
>> | QRTZ_JOB_DETAILS | InnoDB |
>> | QRTZ_JOB_LISTENERS | InnoDB |
>> | QRTZ_LOCKS | InnoDB |
>> | QRTZ_PAUSED_TRIGGER_GRPS | InnoDB |
>> | QRTZ_SCHEDULER_STATE | InnoDB |
>> | QRTZ_SIMPLE_TRIGGERS | InnoDB |
>> | QRTZ_TRIGGERS | InnoDB |
>> | QRTZ_TRIGGER_LISTENERS | InnoDB |
>> | SAKAI_ALIAS | InnoDB |
>> | SAKAI_ALIAS_PROPERTY | InnoDB |
>> | SAKAI_CLUSTER | InnoDB |
>> | SAKAI_DIGEST | InnoDB |
>> | SAKAI_EVENT | InnoDB |
>> | SAKAI_EVENT_DELAY | InnoDB |
>> | SAKAI_LOCKS | InnoDB |
>> | SAKAI_MESSAGE_BUNDLE | InnoDB |
>> | SAKAI_NOTIFICATION | InnoDB |
>> | SAKAI_PERSON_META_T | InnoDB |
>> | SAKAI_PERSON_T | InnoDB |
>> | SAKAI_POSTEM_GRADEBOOK | InnoDB |
>> | SAKAI_POSTEM_HEADINGS | InnoDB |
>> | SAKAI_POSTEM_STUDENT | InnoDB |
>> | SAKAI_POSTEM_STUDENT_GRADES | InnoDB |
>> | SAKAI_PREFERENCES | InnoDB |
>> | SAKAI_PRESENCE | InnoDB |
>> | SAKAI_PRIVACY_RECORD | InnoDB |
>> | SAKAI_REALM | InnoDB |
>> | SAKAI_REALM_FUNCTION | InnoDB |
>> | SAKAI_REALM_PROPERTY | InnoDB |
>> | SAKAI_REALM_PROVIDER | InnoDB |
>> | SAKAI_REALM_RL_FN | InnoDB |
>> | SAKAI_REALM_RL_GR | InnoDB |
>> | SAKAI_REALM_ROLE | InnoDB |
>> | SAKAI_REALM_ROLE_DESC | InnoDB |
>> | SAKAI_SESSION | InnoDB |
>> | SAKAI_SITE | InnoDB |
>> | SAKAI_SITE_GROUP | InnoDB |
>> | SAKAI_SITE_GROUP_PROPERTY | InnoDB |
>> | SAKAI_SITE_PAGE | InnoDB |
>> | SAKAI_SITE_PAGE_PROPERTY | InnoDB |
>> | SAKAI_SITE_PROPERTY | InnoDB |
>> | SAKAI_SITE_TOOL | InnoDB |
>> | SAKAI_SITE_TOOL_PROPERTY | InnoDB |
>> | SAKAI_SITE_USER | InnoDB |
>> | SAKAI_SYLLABUS_ATTACH | InnoDB |
>> | SAKAI_SYLLABUS_DATA | InnoDB |
>> | SAKAI_SYLLABUS_ITEM | InnoDB |
>> | SAKAI_USER | InnoDB |
>> | SAKAI_USER_ID_MAP | InnoDB |
>> | SAKAI_USER_PROPERTY | InnoDB |
>> | SAM_ANSWERFEEDBACK_T | InnoDB |
>> | SAM_ANSWER_T | InnoDB |
>> | SAM_ASSESSACCESSCONTROL_T | InnoDB |
>> | SAM_ASSESSEVALUATION_T | InnoDB |
>> | SAM_ASSESSFEEDBACK_T | InnoDB |
>> | SAM_ASSESSMENTBASE_T | InnoDB |
>> | SAM_ASSESSMENTGRADING_T | InnoDB |
>> | SAM_ASSESSMETADATA_T | InnoDB |
>> | SAM_ATTACHMENT_T | InnoDB |
>> | SAM_AUTHZDATA_T | InnoDB |
>> | SAM_FAVORITECOLCHOICESITEM_T | InnoDB |
>> | SAM_FAVORITECOLCHOICES_T | InnoDB |
>> | SAM_FUNCTIONDATA_T | InnoDB |
>> | SAM_GRADINGATTACHMENT_T | InnoDB |
>> | SAM_GRADINGSUMMARY_T | InnoDB |
>> | SAM_ITEMFEEDBACK_T | InnoDB |
>> | SAM_ITEMGRADING_T | InnoDB |
>> | SAM_ITEMMETADATA_T | InnoDB |
>> | SAM_ITEMTEXT_T | InnoDB |
>> | SAM_ITEM_T | InnoDB |
>> | SAM_MEDIA_T | InnoDB |
>> | SAM_PUBLISHEDACCESSCONTROL_T | InnoDB |
>> | SAM_PUBLISHEDANSWERFEEDBACK_T | InnoDB |
>> | SAM_PUBLISHEDANSWER_T | InnoDB |
>> | SAM_PUBLISHEDASSESSMENT_T | InnoDB |
>> | SAM_PUBLISHEDATTACHMENT_T | InnoDB |
>> | SAM_PUBLISHEDEVALUATION_T | InnoDB |
>> | SAM_PUBLISHEDFEEDBACK_T | InnoDB |
>> | SAM_PUBLISHEDITEMFEEDBACK_T | InnoDB |
>> | SAM_PUBLISHEDITEMMETADATA_T | InnoDB |
>> | SAM_PUBLISHEDITEMTEXT_T | InnoDB |
>> | SAM_PUBLISHEDITEM_T | InnoDB |
>> | SAM_PUBLISHEDMETADATA_T | InnoDB |
>> | SAM_PUBLISHEDSECTIONMETADATA_T | InnoDB |
>> | SAM_PUBLISHEDSECTION_T | InnoDB |
>> | SAM_PUBLISHEDSECUREDIP_T | InnoDB |
>> | SAM_QUALIFIERDATA_T | InnoDB |
>> | SAM_QUESTIONPOOLACCESS_T | InnoDB |
>> | SAM_QUESTIONPOOLITEM_T | InnoDB |
>> | SAM_QUESTIONPOOL_T | InnoDB |
>> | SAM_SECTIONMETADATA_T | InnoDB |
>> | SAM_SECTION_T | InnoDB |
>> | SAM_SECUREDIP_T | InnoDB |
>> | SAM_STUDENTGRADINGSUMMARY_T | InnoDB |
>> | SAM_TYPE_T | InnoDB |
>> | SCHEDULER_DELAYED_INVOCATION | InnoDB |
>> | SITEASSOC_CONTEXT_ASSOCIATION | InnoDB |
>> | SMS_ACCOUNT | InnoDB |
>> | SMS_CONFIG | InnoDB |
>> | SMS_MESSAGE | InnoDB |
>> | SMS_TASK | InnoDB |
>> | SMS_TRANSACTION | InnoDB |
>> | SSQ_ANSWER | InnoDB |
>> | SSQ_QUESTION | InnoDB |
>> | SSQ_SITETYPE_QUESTIONS | InnoDB |
>> | SSQ_USER_ANSWER | InnoDB |
>> | SST_EVENTS | InnoDB |
>> | SST_JOB_RUN | InnoDB |
>> | SST_PREFERENCES | InnoDB |
>> | SST_PRESENCES | InnoDB |
>> | SST_REPORTS | InnoDB |
>> | SST_RESOURCES | InnoDB |
>> | SST_SERVERSTATS | MyISAM |
>> | SST_SITEACTIVITY | InnoDB |
>> | SST_SITEVISITS | InnoDB |
>> | SST_USERSTATS | MyISAM |
>> | TAGGABLE_LINK | InnoDB |
>> | URL_RANDOMISED_MAPPINGS_T | InnoDB |
>> | VALIDATIONACCOUNT_ITEM | InnoDB |
>> | content_resource_lock | InnoDB |
>> | dw_assignment_status | MyISAM |
>> | dw_content_resource_lock | MyISAM |
>> | dw_guidance | MyISAM |
>> | dw_guidance_item | MyISAM |
>> | dw_guidance_item_file | MyISAM |
>> | dw_matrix | MyISAM |
>> | dw_matrix_cell | MyISAM |
>> | dw_metaobj_form_def | MyISAM |
>> | dw_pres_itemdef_mimetype | MyISAM |
>> | dw_presentation | MyISAM |
>> | dw_presentation_comment | MyISAM |
>> | dw_presentation_item | MyISAM |
>> | dw_presentation_item_def | MyISAM |
>> | dw_presentation_item_property | MyISAM |
>> | dw_presentation_layout | MyISAM |
>> | dw_presentation_log | MyISAM |
>> | dw_presentation_page | MyISAM |
>> | dw_presentation_page_item | MyISAM |
>> | dw_presentation_page_region | MyISAM |
>> | dw_presentation_template | MyISAM |
>> | dw_resource | MyISAM |
>> | dw_resource_collection | MyISAM |
>> | dw_review_items | MyISAM |
>> | dw_scaffolding | MyISAM |
>> | dw_scaffolding_cell | MyISAM |
>> | dw_scaffolding_cell_evaluators | MyISAM |
>> | dw_scaffolding_criteria | MyISAM |
>> | dw_scaffolding_levels | MyISAM |
>> | dw_session | MyISAM |
>> | dw_site_users | MyISAM |
>> | dw_sites | MyISAM |
>> | dw_template_file_ref | MyISAM |
>> | dw_users | MyISAM |
>> | dw_wizard | MyISAM |
>> | dw_wizard_category | MyISAM |
>> | dw_wizard_completed | MyISAM |
>> | dw_wizard_completed_category | MyISAM |
>> | dw_wizard_completed_page | MyISAM |
>> | dw_wizard_page | MyISAM |
>> | dw_wizard_page_attachments | MyISAM |
>> | dw_wizard_page_def | MyISAM |
>> | dw_wizard_page_def_add_forms | MyISAM |
>> | dw_wizard_page_forms | MyISAM |
>> | dw_wizard_page_sequence | MyISAM |
>> | dw_wizard_style | MyISAM |
>> | dw_wizard_support_item | MyISAM |
>> | dw_workflow_parent | MyISAM |
>> | hibernate_unique_key | InnoDB |
>> | lesson_builder_comments | InnoDB |
>> | lesson_builder_groups | InnoDB |
>> | lesson_builder_items | InnoDB |
>> | lesson_builder_log | InnoDB |
>> | lesson_builder_pages | InnoDB |
>> | lesson_builder_student_pages | InnoDB |
>> | lti_content | MyISAM |
>> | lti_mapping | MyISAM |
>> | lti_tools | MyISAM |
>> | melete_cc_license | InnoDB |
>> | melete_course_module | InnoDB |
>> | melete_license | InnoDB |
>> | melete_module | InnoDB |
>> | melete_module_shdates | InnoDB |
>> | melete_resource | InnoDB |
>> | melete_section | InnoDB |
>> | melete_section_resource | InnoDB |
>> | melete_site_preference | InnoDB |
>> | melete_user_preference | InnoDB |
>> | metaobj_form_def | InnoDB |
>> | osp_authz_simple | InnoDB |
>> | osp_completed_wiz_category | InnoDB |
>> | osp_completed_wizard | InnoDB |
>> | osp_completed_wizard_page | InnoDB |
>> | osp_guidance | InnoDB |
>> | osp_guidance_item | InnoDB |
>> | osp_guidance_item_file | InnoDB |
>> | osp_help_glossary | InnoDB |
>> | osp_help_glossary_desc | InnoDB |
>> | osp_list_config | InnoDB |
>> | osp_matrix | InnoDB |
>> | osp_matrix_cell | InnoDB |
>> | osp_matrix_label | InnoDB |
>> | osp_portal_category_pages | InnoDB |
>> | osp_portal_site_type | InnoDB |
>> | osp_portal_special_sites | InnoDB |
>> | osp_portal_tool_category | InnoDB |
>> | osp_portal_tool_functions | InnoDB |
>> | osp_portal_tool_type | InnoDB |
>> | osp_pres_itemdef_mimetype | InnoDB |
>> | osp_presentation | InnoDB |
>> | osp_presentation_comment | InnoDB |
>> | osp_presentation_item | InnoDB |
>> | osp_presentation_item_def | InnoDB |
>> | osp_presentation_item_property | InnoDB |
>> | osp_presentation_layout | InnoDB |
>> | osp_presentation_log | InnoDB |
>> | osp_presentation_page | InnoDB |
>> | osp_presentation_page_item | InnoDB |
>> | osp_presentation_page_region | InnoDB |
>> | osp_presentation_template | InnoDB |
>> | osp_review | InnoDB |
>> | osp_scaffolding | InnoDB |
>> | osp_scaffolding_attachments | InnoDB |
>> | osp_scaffolding_cell | InnoDB |
>> | osp_scaffolding_cell_form_defs | InnoDB |
>> | osp_scaffolding_criteria | InnoDB |
>> | osp_scaffolding_form_defs | InnoDB |
>> | osp_scaffolding_levels | InnoDB |
>> | osp_site_tool | InnoDB |
>> | osp_style | InnoDB |
>> | osp_template_file_ref | InnoDB |
>> | osp_wiz_page_attachment | InnoDB |
>> | osp_wiz_page_def_attachments | InnoDB |
>> | osp_wiz_page_form | InnoDB |
>> | osp_wizard | InnoDB |
>> | osp_wizard_category | InnoDB |
>> | osp_wizard_page | InnoDB |
>> | osp_wizard_page_def | InnoDB |
>> | osp_wizard_page_sequence | InnoDB |
>> | osp_workflow | InnoDB |
>> | osp_workflow_item | InnoDB |
>> | osp_workflow_parent | InnoDB |
>> | report_xsl_file | InnoDB |
>> | reports_def_xml | InnoDB |
>> | reports_param | InnoDB |
>> | reports_report | InnoDB |
>> | reports_result | InnoDB |
>> | rwikicurrentcontent | InnoDB |
>> | rwikihistory | InnoDB |
>> | rwikihistorycontent | InnoDB |
>> | rwikiobject | InnoDB |
>> | rwikipagemessage | InnoDB |
>> | rwikipagepresence | InnoDB |
>> | rwikipagetrigger | InnoDB |
>> | rwikipreference | InnoDB |
>> | rwikiproperties | InnoDB |
>> | scheduler_trigger_events | InnoDB |
>> | search_journal | InnoDB |
>> | search_node_status | InnoDB |
>> | search_segments | InnoDB |
>> | search_transaction | InnoDB |
>> | searchbuilderitem | InnoDB |
>> | searchwriterlock | InnoDB |
>> +--------------------------------+--------+
>>
>>
>> -- Warwick Bruce Chapman | +27 83 7797 094 | http://warwickchapman.com
>>
>>
>> On Mon, Aug 1, 2011 at 1:00 PM, Steve Swinsburg <
>> steve.swinsburg at gmail.com> wrote:
>>
>>> Hi Wolfgang,
>>>
>>> Yes you should be using InnoDB. We successfully converted ours over
>>> about a year ago by dumping the database and reimporting ensuring the
>>> tables were being created as InnoDB.
>>>
>>> cheers,
>>> Steve
>>>
>>> On 01/08/2011, at 7:00 PM, Wolfgang Rohregger wrote:
>>>
>>> > Hi,
>>> >
>>> > I've had troubles running the Sakai 2.8.0 DB upgrade scripts for
>>> MySQL. After doing some research, there have been at least some indicators
>>> that parts, if not the whole, database enginge of MySQL might have been
>>> switched over to InnoDB.
>>> >
>>> > Is InnoDB now used for all Sakai tables and should I migrate the old
>>> MyISAM tables to InnoDB?
>>> >
>>> > Cheers,
>>> >
>>> > Wolfgang
>>> > _______________________________________________
>>> > production mailing list
>>> > production at collab.sakaiproject.org
>>> > http://collab.sakaiproject.org/mailman/listinfo/production
>>> >
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>>
>>
>>
>
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