[gradebook2-dev] [Building Sakai] All our production nodes died at the same time

Jon Gorrono jpgorrono at ucdavis.edu
Thu Sep 30 19:25:42 PDT 2010


I think this is just a timeing coincidence... the stack trace
references the JAXBContextResolver in gb2 whic boost straps the jaxb
be context with a 'natural' config

anyway, rc1 was using jersey-json 1.1.4.1 which pulls in 2.1.12 of the jaxb impl

So, there must be something weird about the build process or an extra
copy of that jar in shared or common



On Wed, Sep 29, 2010 at 9:31 AM, Thomas Amsler <tpamsler at ucdavis.edu> wrote:
> What's strange is that it references Gradebook2EntityProducerTransferAgent:
> 2010-09-29 12:15:40,694  INFO main
> org.sakaiproject.gradebook.entity.Gradebook2EntityProducerTransferAgent -
> setting entityproducer label: gradebook2
> ..., which is commented out in v1.3.0. This spring bean is configured in:
> https://source.sakaiproject.org/contrib///gradebook2/tags/1.3.0/war/WEB-INF/gbServices.xml
> -- Thomas
>
> On Wed, Sep 29, 2010 at 9:22 AM, Kusnetz, Jeremy <JKusnetz at apus.edu> wrote:
>>
>> Okay we just started up a node after upgrading Java from 1.5.0_21 to
>> 1.5.0_22 and Tomcat from 5.5.30 to 5.5.31
>>
>>
>>
>> Here are all references to gradebook upon startup:
>>
>>
>>
>> grep -i gradebook /var/log/tomcat_servers/tomcat200/catalina.out
>>
>> 2010-09-29 12:14:30,100  INFO main org.sakaiproject.util.ComponentsLoader
>> - loadComponentPackage:
>> /usr/local/apus/tomcat_servers/servers/tomcat200/components/sakai-gradebook-service-pack
>>
>> 2010-09-29 12:14:30,188  INFO main org.sakaiproject.util.ComponentsLoader
>> - loadComponentPackage:
>> /usr/local/apus/tomcat_servers/servers/tomcat200/components/sakai-gradebooksample-grade-converter
>>
>> 2010-09-29 12:14:37,805  INFO main
>> org.sakaiproject.tool.impl.ToolComponent - init(): hidden tools:
>> sakai.sections sakai.dropbox sakai.rutgers.padsearch sakai.rutgers.policy
>> sakai.rutgers.test2prod sakai.postem sakai.datapoint edia.sakai.selector
>> sakai.rutgers.lounge sakai.mailtool sakai.blogwow sakai.gradebook.tool
>> sakai.mneme sakai.rutgers.zimbra sakai.gmt sakai.kaltura sakai.rwiki
>> sakai.rutgers.campus rsmart.virtual_classroom.tool rsn.linktool.pentaho
>> sakai.search sakai.rsf.evaluation sakai.rutgers.library sakai.reports
>> sakai.mailbox blogger sakai.rutgers.liveatedu sakai.rutgers.rosetta
>> sakai-site-pageorder-helper sakai.formbuilder
>>
>> 2010-09-29 12:14:39,751  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/Gradebook.hbm.xml]
>>
>> 2010-09-29 12:14:39,765  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/GradableObject.hbm.xml]
>>
>> 2010-09-29 12:14:39,775  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/GradeRecord.hbm.xml]
>>
>> 2010-09-29 12:14:39,783  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/GradingEvent.hbm.xml]
>>
>> 2010-09-29 12:14:39,791  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/GradingScale.hbm.xml]
>>
>> 2010-09-29 12:14:39,797  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/GradebookProperty.hbm.xml]
>>
>> 2010-09-29 12:14:39,803  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/GradeMapping.hbm.xml]
>>
>> 2010-09-29 12:14:39,811  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/Spreadsheet.hbm.xml]
>>
>> 2010-09-29 12:14:39,818  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/Comment.hbm.xml]
>>
>> 2010-09-29 12:14:39,825  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/Category.hbm.xml]
>>
>> 2010-09-29 12:14:39,831  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/LetterGradePercenteMapping.hbm.xml]
>>
>> 2010-09-29 12:14:39,837  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/Permission.hbm.xml]
>>
>> 2010-09-29 12:14:39,843  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/tool/gradebook/GradableObjectRubric.hbm.xml]
>>
>> 2010-09-29 12:14:40,061  INFO main
>> org.sakaiproject.springframework.orm.hibernate.impl.AdditionalHibernateMappingsImpl
>> - Loading hbm: class path resource
>> [org/sakaiproject/component/app/postem/data/GradebookImpl.hbm.xml]
>>
>> 2010-09-29 12:14:58,699  WARN main
>> org.sakaiproject.entity.impl.EntityManagerComponent - Entity Producer does
>> not provide a root reference
>> :org.sakaiproject.tool.gradebook.facades.sakai2impl.GradebookEntityProducer at 31882554
>>
>> 2010-09-29 12:15:34,716  INFO main org.apache.catalina.startup.HostConfig
>> - Deploying web application archive sakai-gradebook-testservice.war
>>
>> 2010-09-29 12:15:35,202  INFO main
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook-testservice]
>> - Initializing Spring root WebApplicationContext
>>
>> 2010-09-29 12:15:35,213  INFO main org.sakaiproject.util.ToolListener -
>> registering tools from resource: /tools/sakai.gradebook.testservice.xml
>>
>> 2010-09-29 12:15:35,213  INFO main
>> org.sakaiproject.tool.impl.ActiveToolComponent - register: file:
>> /usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-testservice/tools/sakai.gradebook.testservice.xml
>>
>> 2010-09-29 12:15:35,324  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Reading config
>> jar:file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-testservice/WEB-INF/lib/sakai-jsf-app-2.6.3.jar!/META-INF/faces-config.xml
>>
>> 2010-09-29 12:15:35,326  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Reading config
>> jar:file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-testservice/WEB-INF/lib/tomahawk-1.1.6.jar!/META-INF/faces-config.xml
>>
>> 2010-09-29 12:15:35,358  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Starting up MyFaces-package :
>> myfaces-api in version : 1.1.5 from path :
>> file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-testservice/WEB-INF/lib/myfaces-api-1.1.5.jar
>>
>> 2010-09-29 12:15:35,359  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Starting up MyFaces-package :
>> myfaces-impl in version : 1.1.5 from path :
>> file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-testservice/WEB-INF/lib/myfaces-impl-1.1.5.jar
>>
>> 2010-09-29 12:15:35,359  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Starting up MyFaces-package :
>> tomahawk in version : 1.1.6 from path :
>> file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-testservice/WEB-INF/lib/tomahawk-1.1.6.jar
>>
>> 2010-09-29 12:15:35,698  INFO main
>> org.apache.myfaces.webapp.StartupServletContextListener - ServletContext
>> '/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-testservice/'
>> initialized.
>>
>> 2010-09-29 12:15:35,712  INFO main org.apache.catalina.startup.HostConfig
>> - Deploying web application archive sakai-gradebook-tool.war
>>
>> 2010-09-29 12:15:36,387  INFO main
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook-tool]
>> - Initializing Spring root WebApplicationContext
>>
>> 2010-09-29 12:15:37,801  INFO main
>> org.sakaiproject.tool.gradebook.ui.helpers.entity.GradebookEntityProvider -
>> init()
>>
>> 2010-09-29 12:15:37,802  INFO main
>> org.sakaiproject.entitybroker.impl.entityprovider.EntityProviderManagerImpl
>> - EntityBroker: Registered entity provider
>> (org.sakaiproject.tool.gradebook.ui.helpers.entity.GradebookEntityProvider)
>> prefix (gradebook) with 2 capabilities
>>
>> 2010-09-29 12:15:38,314  INFO main
>> org.sakaiproject.tool.gradebook.ui.helpers.entity.GradebookEntityProvider -
>> destroy()
>>
>> 2010-09-29 12:15:38,315  INFO main
>> org.sakaiproject.entitybroker.impl.entityprovider.EntityProviderManagerImpl
>> - EntityBroker: Registered entity provider
>> (org.sakaiproject.entitybroker.impl.entityprovider.EntityProviderManagerImpl$3)
>> prefix (gradebook) with 1 capabilities
>>
>> 2010-09-29 12:15:38,315  INFO main
>> org.sakaiproject.entitybroker.impl.entityprovider.EntityProviderManagerImpl
>> - EntityBroker: Unregistered entity provider capability
>> (org.sakaiproject.entitybroker.entityprovider.CoreEntityProvider) for prefix
>> (gradebook)
>>
>> 2010-09-29 12:15:38,315  INFO main
>> org.sakaiproject.entitybroker.impl.entityprovider.EntityProviderManagerImpl
>> - EntityBroker: Unregistered entity provider
>> (org.sakaiproject.tool.gradebook.ui.helpers.entity.GradebookEntityProvider)
>> and 1 capabilities
>>
>> 2010-09-29 12:15:38,316 ERROR main
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook-tool]
>> - Exception sending context initialized event to listener instance of class
>> org.sakaiproject.util.ContextLoaderListener
>>
>> 2010-09-29 12:15:38,318  INFO main org.sakaiproject.util.ToolListener -
>> registering tools from resource: /tools/sakai.gradebook.helpers.xml
>>
>> 2010-09-29 12:15:38,318  INFO main
>> org.sakaiproject.tool.impl.ActiveToolComponent - register: file:
>> /usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/tools/sakai.gradebook.helpers.xml
>>
>> 2010-09-29 12:15:38,331  WARN main
>> org.sakaiproject.tool.impl.ActiveToolComponent - missing dispatcher for
>> tool: sakai-gradebook-helper
>>
>> 2010-09-29 12:15:38,331  INFO main org.sakaiproject.util.ToolListener -
>> registering tools from resource: /tools/sakai.gradebook.tool.xml
>>
>> 2010-09-29 12:15:38,331  INFO main
>> org.sakaiproject.tool.impl.ActiveToolComponent - register: file:
>> /usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/tools/sakai.gradebook.tool.xml
>>
>> 2010-09-29 12:15:38,352  INFO main org.sakaiproject.util.ToolListener -
>> registering tools from resource: /tools/sakai.gradebook.addItem.helper.xml
>>
>> 2010-09-29 12:15:38,353  INFO main
>> org.sakaiproject.tool.impl.ActiveToolComponent - register: file:
>> /usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/tools/sakai.gradebook.addItem.helper.xml
>>
>> 2010-09-29 12:15:38,467  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Reading config
>> jar:file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/WEB-INF/lib/sakai-jsf-app-2.6.3.jar!/META-INF/faces-config.xml
>>
>> 2010-09-29 12:15:38,470  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Reading config
>> jar:file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/WEB-INF/lib/sakai-jsf-widgets-2.6.3.jar!/META-INF/faces-config.xml
>>
>> 2010-09-29 12:15:38,478  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Reading config
>> jar:file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/WEB-INF/lib/tomahawk-1.1.6.jar!/META-INF/faces-config.xml
>>
>> 2010-09-29 12:15:38,543  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Starting up MyFaces-package :
>> myfaces-api in version : 1.1.5 from path :
>> file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/WEB-INF/lib/myfaces-api-1.1.5.jar
>>
>> 2010-09-29 12:15:38,543  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Starting up MyFaces-package :
>> myfaces-impl in version : 1.1.5 from path :
>> file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/WEB-INF/lib/myfaces-impl-1.1.5.jar
>>
>> 2010-09-29 12:15:38,544  INFO main
>> org.apache.myfaces.config.FacesConfigurator - Starting up MyFaces-package :
>> tomahawk in version : 1.1.6 from path :
>> file:/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/WEB-INF/lib/tomahawk-1.1.6.jar
>>
>> 2010-09-29 12:15:38,949  INFO main
>> org.apache.myfaces.renderkit.html.HtmlRenderKitImpl - Overwriting renderer
>> with family = javax.faces.Messages rendererType = javax.faces.Messages
>> renderer class = org.sakaiproject.tool.gradebook.jsf.DivMessagesRenderer
>>
>> 2010-09-29 12:15:38,950  INFO main
>> org.apache.myfaces.renderkit.html.HtmlRenderKitImpl - Overwriting renderer
>> with family = javax.faces.Message rendererType = javax.faces.Message
>> renderer class = org.sakaiproject.tool.gradebook.jsf.DivMessageRenderer
>>
>> 2010-09-29 12:15:38,951  INFO main
>> org.apache.myfaces.renderkit.html.HtmlRenderKitImpl - Overwriting renderer
>> with family = javax.faces.Command rendererType =
>> org.apache.myfaces.SortHeader renderer class =
>> org.sakaiproject.tool.gradebook.jsf.HtmlSortHeaderRenderer
>>
>> 2010-09-29 12:15:38,976  INFO main
>> org.apache.myfaces.webapp.StartupServletContextListener - ServletContext
>> '/usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook-tool/'
>> initialized.
>>
>> 2010-09-29 12:15:38,984 ERROR main
>> org.apache.catalina.core.StandardContext - Context [/sakai-gradebook-tool]
>> startup failed due to previous errors
>>
>> 2010-09-29 12:15:38,987  INFO main
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook-tool]
>> - Closing Spring root WebApplicationContext
>>
>> 2010-09-29 12:15:38,987  INFO main
>> org.sakaiproject.util.ContextLoaderListener - Destroying Components in
>> sakai-gradebook-tool
>>
>> 2010-09-29 12:15:39,231  INFO main org.apache.catalina.startup.HostConfig
>> - Deploying web application archive sakai-gradebook2.war
>>
>> 2010-09-29 12:15:40,118  INFO main
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Initializing Spring root WebApplicationContext
>>
>> 2010-09-29 12:15:40,121  INFO main
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext - Refreshing
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext at 988145f: display
>> name [Root WebApplicationContext]; startup date [Wed Sep 29 12:15:40 EDT
>> 2010]; parent: org.sakaiproject.util.SakaiApplicationContext at 7b41fab6
>>
>> 2010-09-29 12:15:40,157  INFO main
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext - Bean factory
>> for application context
>> [org.sakaiproject.gradebook.gwt.server.WebApplicationContext at 988145f]:
>> org.springframework.beans.factory.support.DefaultListableBeanFactory at 4663a9e0
>>
>> 2010-09-29 12:15:40,432  INFO main
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> Default Cache bean (org.sakaiproject.springframework.orm.hibernate.L2Cache)
>> for org.sakaiproject.gradebook.gwt.sakai.model.Realm
>>
>> 2010-09-29 12:15:40,446  INFO main
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> Default Cache bean (org.sakaiproject.springframework.orm.hibernate.L2Cache)
>> for org.sakaiproject.gradebook.gwt.sakai.model.RealmRole
>>
>> 2010-09-29 12:15:40,502  INFO main
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> Default Cache bean (org.sakaiproject.springframework.orm.hibernate.L2Cache)
>> for org.sakaiproject.gradebook.gwt.sakai.model.RealmGroup
>>
>> 2010-09-29 12:15:40,685  INFO main
>> org.sakaiproject.gradebook.gwt.sakai.Gradebook2ComponentServiceImpl - Using
>> default institutional adviser
>>
>> 2010-09-29 12:15:40,694  INFO main
>> org.sakaiproject.gradebook.entity.Gradebook2EntityProducerTransferAgent -
>> setting entityproducer label: gradebook2
>>
>> 2010-09-29 12:15:41,091  INFO main org.sakaiproject.util.ToolListener -
>> registering tools from resource: /tools/sakai.gradebook.gwt.rpc.xml
>>
>> 2010-09-29 12:15:41,091  INFO main
>> org.sakaiproject.tool.impl.ActiveToolComponent - register: file:
>> /usr/local/apus/tomcat_servers/servers/tomcat200/webapps/sakai-gradebook2/tools/sakai.gradebook.gwt.rpc.xml
>>
>> 2010-09-29 12:15:41,139  INFO main
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Initializing Spring FrameworkServlet 'sakai.gradebook2.dispatcher'
>>
>> 2010-09-29 12:15:41,194  INFO main
>> org.sakaiproject.gradebook.gwt.server.ServletWrappingController - GB2:
>> security is enabled = true
>>
>> 2010-09-29 12:15:41,194  INFO main
>> org.sakaiproject.gradebook.gwt.server.ServletWrappingController - GB2:
>> security check context prefix = /xsl-portal/
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver as a provider
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.InvalidInputMapper, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.InvalidInputMapper as a provider
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.SecurityMapper, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.SecurityMapper as a provider class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.GradebookCreationMapper, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.GradebookCreationMapper as a
>> provider class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Application, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Application as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Authorization, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Authorization as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Configuration, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Configuration as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradeEvent, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradeEvent as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradeFormat, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradeFormat as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradeMap, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradeMap as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Grader, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Grader as a root resource
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradesVerification, of
>> type org.sakaiproject.gradebook.gwt.sakai.rest.resource.GradesVerification
>> as a root resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.History, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.History as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Item, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Item as a root resource
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Items, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Items as a root resource
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.LearnerRecord, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.LearnerRecord as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Permission, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Permission as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Permissions, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Permissions as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Roster, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Roster as a root resource
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Sections, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Sections as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Statistics, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Statistics as a root
>> resource class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Upload, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Upload as a root resource
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Export, of type
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.Export as a root resource
>> class
>>
>> INFO: Registering Spring bean,
>> org.sakaiproject.gradebook.gwt.sakai.rest.resource.SubmitFinalGrades, of
>> type org.sakaiproject.gradebook.gwt.sakai.rest.resource.SubmitFinalGrades as
>> a root resource class
>>
>> 2010-09-29 12:15:42,309  INFO main
>> org.sakaiproject.gradebook.gwt.server.ServletWrappingController - GB2:
>> security is enabled = true
>>
>> 2010-09-29 12:15:42,309  INFO main
>> org.sakaiproject.gradebook.gwt.server.ServletWrappingController - GB2:
>> security check context prefix = /xsl-portal/
>>
>>
>>
>> From: Thomas Amsler [mailto:tpamsler at ucdavis.edu]
>> Sent: Wednesday, September 29, 2010 12:13 PM
>> To: Kusnetz, Jeremy
>> Cc: Developers Sakai-Dev; ucd-sakai-dev at smartsite.ucdavis.edu;
>> gradebook2-dev at collab.sakaiproject.org
>> Subject: Re: [Building Sakai] All our production nodes died at the same
>> time
>>
>>
>>
>> Also do you see any warnings/errors w.r.t. gradebook2 beans in
>> catalina.out when you startup a node?
>>
>> -- Thomas
>>
>> On Wed, Sep 29, 2010 at 9:09 AM, Thomas Amsler <tpamsler at ucdavis.edu>
>> wrote:
>>
>> Jeremy,
>>
>>
>>
>> Just want to let you know that I am looking into this w.r.t. gradebook2.
>>
>>
>>
>> Questions:
>>
>>
>>
>> - Are you using the following
>> tag: https://source.sakaiproject.org/contrib/gradebook2/tags/1.3.0
>>
>>
>>
>> - Gradebook2 uses jaxb-impl-2.1.12.jar, which is located
>> in tomcat/webapps/sakai-gradebook2/WEB-INF/lib/. Do you use any other tools
>> that use jaxb?
>>
>>
>>
>>
>>
>> Best,
>>
>> -- Thomas
>>
>> On Wed, Sep 29, 2010 at 8:21 AM, Kusnetz, Jeremy <JKusnetz at apus.edu>
>> wrote:
>>
>> Just some more info:
>>
>>
>>
>> Last couple of events right before the crash. This is our event archive
>> table, I pull out the EID and SITE_ID from the session.
>>
>>
>>
>> stsakai6 was a brand new node that was brought up yesterday and is not
>> actually getting any traffic yet.
>>
>>
>>
>> *************************** 28. row ***************************
>>
>> EVENT_ID: 1680600
>>
>> EVENT_DATE: 2010-09-29 08:38:33
>>
>> EVENT: gradebook2.assignGrade
>>
>> REF: /gradebook/30/785/f886864e-20da-4aed-8993-bfb56a756141
>>
>> CONTEXT: 124743
>>
>> SESSION_ID: 2ac8df2c-cf8b-494b-8652-d3a448f7608a
>>
>> EVENT_CODE: m
>>
>> EID: SH1980
>>
>> SITE_ID: 124743
>>
>> SUM:
>>
>> *************************** 29. row ***************************
>>
>> EVENT_ID: 1680601
>>
>> EVENT_DATE: 2010-09-29 08:38:36
>>
>> EVENT: TOOL_REGISTERED
>>
>> REF: sakai.gradebook.gwt.rpc
>>
>> CONTEXT:
>>
>> SESSION_ID: ~stsakai6-100~?
>>
>> EVENT_CODE: a
>>
>> EID: ?
>>
>> SITE_ID: sakai.gradebook.gwt.rpc
>>
>> SUM:
>>
>>
>>
>> Now looking at stsakai6 catalina.out  I'm seeing the following when all
>> the other nodes crashed. It look like stsakai6 was the cause somehow.
>>
>>
>>
>> 2010-09-29 08:38:31,831  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.startup.HostConfig - Undeploying context
>> [/sakai-gradebook2]
>>
>> 2010-09-29 08:38:31,832  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Destroying Spring FrameworkServlet 'sakai.gradebook2.dispatcher'
>>
>> 2010-09-29 08:38:31,833 ERROR
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.springframework.beans.factory.support.DisposableBeanAdapter - Couldn't
>> invoke destroy method of bean with name 'ImportWrappingController'
>>
>> java.lang.NullPointerException
>>
>>                 at
>> org.springframework.web.servlet.mvc.ServletWrappingController.destroy(ServletWrappingController.java:184)
>>
>>                 at
>> org.springframework.beans.factory.support.DisposableBeanAdapter.destroy(DisposableBeanAdapter.java:145)
>>
>>                 at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroyBean(DefaultSingletonBeanRegistry.java:347)
>>
>>                 at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroySingleton(DefaultSingletonBeanRegistry.java:320)
>>
>>                 at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroySingletons(DefaultSingletonBeanRegistry.java:293)
>>
>>                 at
>> org.springframework.context.support.AbstractApplicationContext.destroyBeans(AbstractApplicationContext.java:706)
>>
>>                 at
>> org.springframework.context.support.AbstractApplicationContext.doClose(AbstractApplicationContext.java:684)
>>
>>                 at
>> org.springframework.context.support.AbstractApplicationContext.close(AbstractApplicationContext.java:651)
>>
>>                 at
>> org.springframework.web.servlet.FrameworkServlet.destroy(FrameworkServlet.java:547)
>>
>>                 at
>> org.apache.catalina.core.StandardWrapper.unload(StandardWrapper.java:1360)
>>
>>                 at
>> org.apache.catalina.core.StandardWrapper.stop(StandardWrapper.java:1688)
>>
>>                 at
>> org.apache.catalina.core.StandardContext.stop(StandardContext.java:4352)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.removeChild(ContainerBase.java:893)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.checkResources(HostConfig.java:1060)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.check(HostConfig.java:1268)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:301)
>>
>>                 at
>> org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1306)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1570)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1579)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1559)
>>
>>                 at java.lang.Thread.run(Thread.java:619)
>>
>> 2010-09-29 08:38:31,854  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Closing Spring root WebApplicationContext
>>
>> 2010-09-29 08:38:31,854  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext - Closing
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext at 5e713ed7:
>> display name [Root WebApplicationContext]; startup date [Tue Sep 28 13:51:18
>> EDT 2010]; parent: org.sakaiproject.util.SakaiApplicationContext at 1b1756a4
>>
>> 2010-09-29 08:38:31,854  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.AddableSessionFactoryBean -
>> Closing Hibernate SessionFactory
>>
>> 2010-09-29 08:38:31,854  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Stopping
>> Hibernate Cache Cache -------------------------------
>>
>> 2010-09-29 08:38:31,854  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.util.ContextLoaderListener - Destroying Components in
>> sakai-gradebook-gwt-rpc
>>
>> 2010-09-29 08:38:32,070  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.startup.HostConfig - Deploying web application archive
>> sakai-gradebook2.war
>>
>> 2010-09-29 08:38:35,571  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Initializing Spring root WebApplicationContext
>>
>> 2010-09-29 08:38:35,573  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext - Refreshing
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext at 66252c7d:
>> display name [Root WebApplicationContext]; startup date [Wed Sep 29 08:38:35
>> EDT 2010]; parent: org.sakaiproject.util.SakaiApplicationContext at 1b1756a4
>>
>> 2010-09-29 08:38:35,628  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext - Bean factory
>> for application context
>> [org.sakaiproject.gradebook.gwt.server.WebApplicationContext at 66252c7d]:
>> org.springframework.beans.factory.support.DefaultListableBeanFactory at 1f4a0cff
>>
>> 2010-09-29 08:38:35,860  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.AddableSessionFactoryBean -
>> Building new Hibernate SessionFactory
>>
>> 2010-09-29 08:38:35,876  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Starting
>> Hibernate Cache Cache ++++++++++++++++++++++++++++++++
>>
>> 2010-09-29 08:38:35,894  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> Default Cache bean (org.sakaiproject.springframework.orm.hibernate.L2Cache)
>> for org.sakaiproject.gradebook.gwt.sakai.model.RealmRole
>>
>> 2010-09-29 08:38:35,913  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> Default Cache bean (org.sakaiproject.springframework.orm.hibernate.L2Cache)
>> for org.sakaiproject.gradebook.gwt.sakai.model.Realm
>>
>> 2010-09-29 08:38:35,930  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> Default Cache bean (org.sakaiproject.springframework.orm.hibernate.L2Cache)
>> for org.sakaiproject.gradebook.gwt.sakai.model.RealmGroup
>>
>> 2010-09-29 08:38:35,969  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> cache from cache manager: org.hibernate.cache.UpdateTimestampsCache
>>
>> 2010-09-29 08:38:35,970  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Loaded
>> cache from cache manager: org.hibernate.cache.StandardQueryCache
>>
>> 2010-09-29 08:38:36,032  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.gradebook.gwt.sakai.Gradebook2ComponentServiceImpl - Using
>> default institutional adviser
>>
>> 2010-09-29 08:38:36,039  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.gradebook.entity.Gradebook2EntityProducerTransferAgent -
>> setting entityproducer label: gradebook2
>>
>> Sep 29, 2010 8:38:36 AM com.sun.jersey.api.json.JSONConfiguration natural
>>
>> SEVERE: NATURAL JSON notation configured, but JAXB RI 2.1.10 not found.
>> For the recent builds to get this working correctly, you need even at least
>> JAXB version 2.1.12. Please add it to your classpath!
>>
>> 2010-09-29 08:38:36,094  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.AddableSessionFactoryBean -
>> Closing Hibernate SessionFactory
>>
>> 2010-09-29 08:38:36,094  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Stopping
>> Hibernate Cache Cache -------------------------------
>>
>> 2010-09-29 08:38:36,094 ERROR
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.springframework.web.context.ContextLoader - Context initialization
>> failed
>>
>> org.springframework.beans.factory.BeanCreationException: Error creating
>> bean with name
>> 'org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver' defined in
>> ServletContext resource [/WEB-INF/rest.xml]: Instantiation of bean failed;
>> nested exception is org.springframework.beans.BeanInstantiationException:
>> Could not instantiate bean class
>> [org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver]: Constructor
>> threw exception; nested exception is java.lang.RuntimeException: NATURAL
>> JSON notation configured, but JAXB RI 2.1.10 not found. For the recent
>> builds to get this working correctly, you need even at least JAXB version
>> 2.1.12. Please add it to your classpath!
>>
>> Caused by:
>>
>> org.springframework.beans.BeanInstantiationException: Could not
>> instantiate bean class
>> [org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver]: Constructor
>> threw exception; nested exception is java.lang.RuntimeException: NATURAL
>> JSON notation configured, but JAXB RI 2.1.10 not found. For the recent
>> builds to get this working correctly, you need even at least JAXB version
>> 2.1.12. Please add it to your classpath!
>>
>> Caused by:
>>
>> java.lang.RuntimeException: NATURAL JSON notation configured, but JAXB RI
>> 2.1.10 not found. For the recent builds to get this working correctly, you
>> need even at least JAXB version 2.1.12. Please add it to your classpath!
>>
>>                 at
>> com.sun.jersey.api.json.JSONConfiguration.natural(JSONConfiguration.java:351)
>>
>>                 at
>> org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver.<init>(JAXBContextResolver.java:19)
>>
>>                 at
>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>>
>>                 at
>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>>
>>                 at
>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>>
>>                 at
>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>
>>                 at
>> org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:85)
>>
>>                 at
>> org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:61)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:756)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:721)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:384)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
>>
>>                 at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
>>
>>                 at
>> org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:287)
>>
>>                 at
>> org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352)
>>
>>                 at
>> org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
>>
>>                 at
>> org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
>>
>>                 at
>> org.sakaiproject.component.impl.ContextLoader.initWebApplicationContext(ContextLoader.java:64)
>>
>>                 at
>> org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
>>
>>                 at
>> org.sakaiproject.util.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:56)
>>
>>                 at
>> org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3795)
>>
>>                 at
>> org.apache.catalina.core.StandardContext.start(StandardContext.java:4252)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
>>
>>                 at
>> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:884)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:737)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.check(HostConfig.java:1271)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:301)
>>
>>                 at
>> org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1306)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1570)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1579)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1559)
>>
>>                 at java.lang.Thread.run(Thread.java:619)
>>
>> 2010-09-29 08:38:36,094 ERROR
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Exception sending context initialized event to listener instance of class
>> org.sakaiproject.util.ContextLoaderListener
>>
>> org.springframework.beans.factory.BeanCreationException: Error creating
>> bean with name
>> 'org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver' defined in
>> ServletContext resource [/WEB-INF/rest.xml]: Instantiation of bean failed;
>> nested exception is org.springframework.beans.BeanInstantiationException:
>> Could not instantiate bean class
>> [org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver]: Constructor
>> threw exception; nested exception is java.lang.RuntimeException: NATURAL
>> JSON notation configured, but JAXB RI 2.1.10 not found. For the recent
>> builds to get this working correctly, you need even at least JAXB version
>> 2.1.12. Please add it to your classpath!
>>
>> Caused by:
>>
>> org.springframework.beans.BeanInstantiationException: Could not
>> instantiate bean class
>> [org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver]: Constructor
>> threw exception; nested exception is java.lang.RuntimeException: NATURAL
>> JSON notation configured, but JAXB RI 2.1.10 not found. For the recent
>> builds to get this working correctly, you need even at least JAXB version
>> 2.1.12. Please add it to your classpath!
>>
>> Caused by:
>>
>> java.lang.RuntimeException: NATURAL JSON notation configured, but JAXB RI
>> 2.1.10 not found. For the recent builds to get this working correctly, you
>> need even at least JAXB version 2.1.12. Please add it to your classpath!
>>
>>                 at
>> com.sun.jersey.api.json.JSONConfiguration.natural(JSONConfiguration.java:351)
>>
>>                 at
>> org.sakaiproject.gradebook.gwt.sakai.rest.JAXBContextResolver.<init>(JAXBContextResolver.java:19)
>>
>>                 at
>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>>
>>                 at
>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>>
>>                 at
>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>>
>>                 at
>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>
>>                 at
>> org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:85)
>>
>>                 at
>> org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:61)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:756)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:721)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:384)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
>>
>>                 at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
>>
>>                 at
>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
>>
>>                 at
>> org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:287)
>>
>>                 at
>> org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352)
>>
>>                 at
>> org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
>>
>>                 at
>> org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
>>
>>                 at
>> org.sakaiproject.component.impl.ContextLoader.initWebApplicationContext(ContextLoader.java:64)
>>
>>                 at
>> org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
>>
>>                 at
>> org.sakaiproject.util.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:56)
>>
>>                 at
>> org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3795)
>>
>>                 at
>> org.apache.catalina.core.StandardContext.start(StandardContext.java:4252)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
>>
>>                 at
>> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:884)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:737)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.check(HostConfig.java:1271)
>>
>>                 at
>> org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:301)
>>
>>                 at
>> org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1306)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1570)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1579)
>>
>>                 at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1559)
>>
>>                 at java.lang.Thread.run(Thread.java:619)
>>
>> 2010-09-29 08:38:36,096  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.util.ToolListener - registering tools from resource:
>> /tools/sakai.gradebook.gwt.rpc.xml
>>
>> 2010-09-29 08:38:36,096  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.tool.impl.ActiveToolComponent - register: file:
>> /usr/local/apus/tomcat_servers/servers/tomcat100/webapps/sakai-gradebook2/tools/sakai.gradebook.gwt.rpc.xml
>>
>> 2010-09-29 08:38:36,112 ERROR
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.StandardContext - Error listenerStart
>>
>> 2010-09-29 08:38:36,112 ERROR
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.StandardContext - Context [/sakai-gradebook2]
>> startup failed due to previous errors
>>
>> 2010-09-29 08:38:36,114  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Closing Spring root WebApplicationContext
>>
>> 2010-09-29 08:38:36,114  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.util.ContextLoaderListener - Destroying Components in
>> sakai-gradebook-gwt-rpc
>>
>>
>>
>> From: Kusnetz, Jeremy
>> Sent: Wednesday, September 29, 2010 9:02 AM
>> To: Developers Sakai-Dev
>> Cc: 'ucd-sakai-dev at smartsite.ucdavis.edu'
>> Subject: All our production nodes died at the same time
>>
>>
>>
>> It looks like it may be related to gradebook2?  All nodes have the same
>> error.
>>
>>
>>
>> We are running rSmart’s 2.6.4 which is based off of the community 2.6.3
>> CLE running gradebook2 1.30.  We are running java 1.5.0_21-b01, and tomcat
>> 5.5.30 on top of RHEL5.5
>>
>>
>>
>>
>>
>> 2010-09-29 08:38:52,396  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.startup.HostConfig - Undeploying context
>> [/sakai-gradebook2]
>>
>> 2010-09-29 08:38:52,397  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Destroying Spring FrameworkServlet 'sakai.gradebook2.dispatcher'
>>
>> 2010-09-29 08:38:52,401 ERROR
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.springframework.beans.factory.support.DisposableBeanAdapter - Couldn't
>> invoke destroy method of bean with name 'ImportWrappingController'
>>
>> java.lang.NullPointerException
>>
>>         at
>> org.springframework.web.servlet.mvc.ServletWrappingController.destroy(ServletWrappingController.java:184)
>>
>>         at
>> org.springframework.beans.factory.support.DisposableBeanAdapter.destroy(DisposableBeanAdapter.java:145)
>>
>>         at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroyBean(DefaultSingletonBeanRegistry.java:347)
>>
>>         at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroySingleton(DefaultSingletonBeanRegistry.java:320)
>>
>>         at
>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.destroySingletons(DefaultSingletonBeanRegistry.java:293)
>>
>>         at
>> org.springframework.context.support.AbstractApplicationContext.destroyBeans(AbstractApplicationContext.java:706)
>>
>>         at
>> org.springframework.context.support.AbstractApplicationContext.doClose(AbstractApplicationContext.java:684)
>>
>>         at
>> org.springframework.context.support.AbstractApplicationContext.close(AbstractApplicationContext.java:651)
>>
>>         at
>> org.springframework.web.servlet.FrameworkServlet.destroy(FrameworkServlet.java:547)
>>
>>         at
>> org.apache.catalina.core.StandardWrapper.unload(StandardWrapper.java:1360)
>>
>>         at
>> org.apache.catalina.core.StandardWrapper.stop(StandardWrapper.java:1688)
>>
>>         at
>> org.apache.catalina.core.StandardContext.stop(StandardContext.java:4352)
>>
>>         at
>> org.apache.catalina.core.ContainerBase.removeChild(ContainerBase.java:893)
>>
>>         at
>> org.apache.catalina.startup.HostConfig.checkResources(HostConfig.java:1060)
>>
>>         at
>> org.apache.catalina.startup.HostConfig.check(HostConfig.java:1268)
>>
>>         at
>> org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:301)
>>
>>         at
>> org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
>>
>>         at
>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1306)
>>
>>         at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1570)
>>
>>         at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1579)
>>
>>         at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1559)
>>
>>         at java.lang.Thread.run(Thread.java:595)
>>
>> 2010-09-29 08:38:52,451  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/sakai-gradebook2]
>> - Closing Spring root WebApplicationContext
>>
>> 2010-09-29 08:38:52,451  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext - Closing
>> org.sakaiproject.gradebook.gwt.server.WebApplicationContext at 449ba7c9:
>> display name [Root WebApplicationContext]; startup date [Fri Sep 24 06:22:21
>> EDT 2010]; parent: org.sakaiproject.util.SakaiApplicationContext at c2f8b5a
>>
>> 2010-09-29 08:38:52,451  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.AddableSessionFactoryBean -
>> Closing Hibernate SessionFactory
>>
>> 2010-09-29 08:38:52,452  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.springframework.orm.hibernate.SakaiCacheProvider - Stopping
>> Hibernate Cache Cache -------------------------------
>>
>> 2010-09-29 08:38:52,452  INFO
>> ContainerBackgroundProcessor[StandardEngine[Catalina]]
>> org.sakaiproject.util.ContextLoaderListener - Destroying Components in
>> sakai-gradebook-gwt-rpc
>>
>> #
>>
>> # An unexpected error has been detected by HotSpot Virtual Machine:
>>
>> #
>>
>> #  SIGBUS (0x7) at pc=0x00002abe6d799487, pid=22149, tid=1153997120
>>
>> #
>>
>> # Java VM: Java HotSpot(TM) 64-Bit Server VM (1.5.0_21-b01 mixed mode)
>>
>> # Problematic frame:
>>
>> # C  [libzip.so+0xb487]
>>
>> #
>>
>> # An error report file with more information is saved as
>> hs_err_pid22149.log
>>
>> #
>>
>> # If you would like to submit a bug report, please visit:
>>
>> #   http://java.sun.com/webapps/bugreport/crash.jsp
>>
>> #
>>
>> [GC [1 CMS-initial-mark: 0K(4456448K)] 11796K(5144576K), 0.0004320 secs]
>>
>> [CMS-concurrent-mark: 0.052/0.052 secs]
>>
>> [CMS-concurrent-preclean: 0.018/0.018 secs]
>>
>>  CMS: abort preclean due to time [CMS-concurrent-abortable-preclean:
>> 0.304/1.034 secs]
>>
>> [GC[YG occupancy: 35389 K (688128 K)][Rescan (parallel) , 0.0061780
>> secs][weak refs processing, 0.0000070 secs] [1 CMS-remark: 0K(4456448K)]
>> 35389K(5144576K), 0.0063260 secs]
>>
>> [CMS-concurrent-sweep: 0.000/0.000 secs]
>>
>> [CMS-concurrent-reset: 0.190/0.190 secs]
>>
>> This message is private and confidential. If you have received it in
>> error, please notify the sender and remove it from your system.
>>
>>
>>
>> _______________________________________________
>> sakai-dev mailing list
>> sakai-dev at collab.sakaiproject.org
>> http://collab.sakaiproject.org/mailman/listinfo/sakai-dev
>>
>> TO UNSUBSCRIBE: send email to
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>>
>>
>>
>>
>>
>> This message is private and confidential. If you have received it in
>> error, please notify the sender and remove it from your system.
>
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-- 
Jon Gorrono
PGP Key: 0x5434509D -
http{pgp.mit.edu:11371/pks/lookup?search=0x5434509D&op=index}
GSWoT Introducer - {GSWoT:US75 5434509D Jon P. Gorrono <jpgorrono - gswot.org>}
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